Senior Scientist, AI/ML Drug Discovery Job at HireMinds, Alameda, CA

dCttL3VNTmx0RXhUMFhYNWpEYW5DKzd1NHc9PQ==
  • HireMinds
  • Alameda, CA

Job Description

Senior Scientist, AI/ML Drug Discovery

Stealth-Mode Biotech | SF Bay Area, CA

*title and compensation flexible based on background/pedigree

Our client is a stealth-mode biotech startup pioneering AI-first approaches to drug discovery, integrating deep learning, generative models, and large-scale biological datasets to accelerate the development of first-in-class therapeutics.

Responsibilities

  • Design and implement novel generative architectures (e.g., VAEs, GANs, Diffusion Models) for in silico drug design using chemical space representations such as SMILES, SELFIES, and molecular graphs.
  • Apply Graph Neural Networks (GNNs) and Transformer-based architectures to learn molecular embeddings, model protein-drug interactions, and predict functional outcomes.
  • Leverage multi-omics datasets (RNA-seq, proteomics, single-cell transcriptomics, epigenomics) to extract biologically meaningful insights and integrate them into predictive models.
  • Optimize large-scale deep learning pipelines for sequence-based and structure-based drug discovery applications, including protein folding (AlphaFold-inspired), docking simulations, and binding affinity predictions.
  • Contribute to the development of scalable, cloud-based ML workflows (AWS/GCP, Kubernetes, Ray) for high-throughput model training and inference.
  • Maintain cutting-edge knowledge of AI/ML in drug discovery and integrate best practices into our workflows.

Qualifications

  • PhD (or MS with equivalent experience) in Computer Science, Machine Learning, Computational Biology, Bioinformatics, Computational Chemistry, or a related field.
  • 3+ years of hands-on experience in applying deep learning to drug discovery, structural biology, cheminformatics, or genomics.
  • Proven expertise in deep learning architectures, including Transformers (BERT, ESM, AlphaFold), GNNs (GraphConv, GAT, SchNet, GVP), VAEs, and Diffusion Models.
  • Strong background in molecular representation learning, including SMILES embeddings, graph-based molecular descriptors, and structure-based protein-drug modeling.
  • Experience with multi-modal AI models that integrate chemical, biological, and clinical datasets for predictive analytics.
  • Ability to handle high-throughput biological data processing, including working with sequencing data, expression matrices, and biomarker discovery pipelines.
  • Strong software engineering skills in Python, NumPy, Pandas, SQL, and distributed computing (Dask, Ray, Spark).
  • Experience deploying scalable AI models in cloud environments (AWS SageMaker, Vertex AI, Kubernetes, Docker).
  • A strong publication record in machine learning, computational biology, or AI-driven drug discovery.

Why Join?

  • Stealth-mode opportunity – Influence foundational AI-driven drug discovery pipelines before public launch.
  • Cutting-edge AI/ML research – Work with top experts in AI and computational biology.
  • Massive impact – Accelerate drug development for diseases with high unmet need.
  • Equity & Competitive Compensation – Early-stage upside + competitive salary and benefits.
  • Career Growth – Leadership opportunities as the company scales.

Job Tags

Flexible hours,

Similar Jobs

Korn Ferry

President - Multifamily Property Management Operations Job at Korn Ferry

 ...policies and procedures Responsible for compliance with Fair Housing, Non-Discrimination and housing legislation Ensure lease agreements...  ...: ~10+ years of managing a portfolio of 10,000+ units in affordable housing or a mix of Affordable and Class A / B market-rate... 

Cascade Contracting & Services, LLC.

Security Guard Job at Cascade Contracting & Services, LLC.

 ...Cascade Contracting & Services is currently looking to hire a Security Guard on a full time, permanent basis. This position must be performed onsite at Joint Base Pearl Harbor Ford Island in Honolulu, HI and requires the ability to obtain and maintain a Public Trust... 

Lead Advisor

Insurance Operations Specialist Job at Lead Advisor

 ...leading wealth management firm, is seeking an Insurance Operations Specialist to support our...  ...services when needed. Requirements/Licensing Extremely detail-oriented and...  ...Excel, OneNote, Word) Existing Life and Health insurance licenses preferred. If not licensed... 

Cross Country Locums

Certified Registered Nurse Anesthetist Job at Cross Country Locums

 ...Worksite Setting : Hospital Scope of Work : General, Spines, OB, some Ortho, Cath lab Licenses, Certifications, Requirements...  ...be able to do OB epidurals)~ Will be supervised by MD until physicians are comfortable with skill level, then will be doing their own cases... 

AME, Inc.

Field Safety Coordinator Job at AME, Inc.

 ...5 years and we are proud to be industry leaders in the Carolinas and Southeast region. We are currently seeking a Field Safety Coordinator to work closely with the Safety Director, Project Managers, Field Superintendents and Foreman to administer and implement compliance...